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ActiveObjects fails to detect existing tables or create tables with MySQL JDBC Connector 8.0.11
Description
Summary
The ActiveObjects library appears to have incompatibilities with MySQL JDBC Connector 8.0.11. It's unable to detect existing AO_ tables (after upgrade) or create new AO_ tables (for new installations, encountered at least once during Bamboo reproduction attempts). Looks like it's targeting the wrong database / schema.
Environment
Bamboo 6.5.0
Bitbucket 5.10.0
Fisheye/Crucible 4.5.3
MySQL 5.7
MySQL JDBC Connector 8.0.11
Other products unconfirmed / tested.
Steps to Reproduce
Bamboo
Create two MySQL databases (grant permissions to both databases for the same user)
Install Bamboo 6.5.0
Copy the MySQL JDBC Connector 8 into <bamboo-install>/lib
Start Bamboo and install it using one of the databases from Step 1
Immediately there should be errors referencing the AO_2F1435_HEALTH_CHECK_STATUS table in the logs.
Create a plan and perform a build
Click the build result -> Internal Server Error regarding AO_7A45FB_AOTRACKING_ENTRY
If there isn't any errors, try restarting Bamboo. There does appear to be some level of inconsistency to reproduction.
Bitbucket
Install Bitbucket 5.10
Copy the MySQL JDBC Connector 8 into <bitbucket-home>/lib
Start Bitbucket and install it using a MySQL database
Navigate to the Bitbucket URLs (errors should have already started due to background tasks)
Fisheye/Crucible
Install Fisheye/Crucible 4.5.3
Copy the MySQL JDBC Connector 8 into <FISHEYE_INST>/lib
Start Fisheye/Crucible and complete the setup wizard
Migrate to MySQL
In the administration area, try accessing the 'Smart Commits' menu option on the left
Expected Results
AO tables are found in the correct schema and created.
Actual Results
The below exception is thrown in the atlassian-bitbucket.log:
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2018-05-08 06:15:53,013 ERROR [AtlassianEvent::thread-3] @NEHORJx375x10x0 ai8cx7 172.17.0.1 "POST /setup HTTP/1.1" c.a.s.s.a.l.PatchedLifecycleManager LifecycleAware.onStart() failed for component with class 'com.atlassian.bitbucket.internal.mirroring.upstream.DefaultMirrorService' from plugin 'com.atlassian.bitbucket.server.bitbucket-mirroring-upstream'
com.atlassian.activeobjects.internal.ActiveObjectsInitException: bundle [com.atlassian.bitbucket.server.bitbucket-mirroring-upstream]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:95)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86)
at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:38)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.lang.Thread.run(Thread.java:748)
... 1 frame trimmed
Caused by: java.lang.RuntimeException: Could not read fields for table AO_8E6075_MIRRORING_REQUEST
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:139)
at net.java.ao.schema.ddl.SchemaReader.readFields(SchemaReader.java:126)
at net.java.ao.schema.ddl.SchemaReader.readTable(SchemaReader.java:110)
at net.java.ao.schema.ddl.SchemaReader.access$000(SchemaReader.java:62)
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:99)
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:97)
at com.google.common.collect.Iterators$8.transform(Iterators.java:799)
at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48)
at com.google.common.collect.Iterators.addAll(Iterators.java:362)
at com.google.common.collect.Lists.newArrayList(Lists.java:160)
at com.google.common.collect.Lists.newArrayList(Lists.java:144)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:97)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:88)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:81)
at net.java.ao.schema.SchemaGenerator.generateImpl(SchemaGenerator.java:107)
at net.java.ao.schema.SchemaGenerator.migrate(SchemaGenerator.java:84)
at net.java.ao.EntityManager.migrate(EntityManager.java:128)
at com.atlassian.activeobjects.internal.EntityManagedActiveObjects.migrate(EntityManagedActiveObjects.java:51)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:77)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:72)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:21)
at com.atlassian.stash.internal.sal.spi.HostContextAccessorImpl.doInTransaction(HostContextAccessorImpl.java:54)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate.execute(HostContextTransactionTemplate.java:18)
at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory.create(AbstractActiveObjectsFactory.java:72)
at com.atlassian.activeobjects.internal.DelegatingActiveObjectsFactory.create(DelegatingActiveObjectsFactory.java:32)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:91)
... 6 common frames omitted
Caused by: java.sql.SQLSyntaxErrorException: Unknown table 'AO_8E6075_MIRRORING_REQUEST' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247)
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3149)
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3137)
at com.mysql.cj.jdbc.IterateBlock.doForAll(IterateBlock.java:56)
at com.mysql.cj.jdbc.DatabaseMetaData.getPrimaryKeys(DatabaseMetaData.java:3190)
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:127)
... 37 common frames omitted
Many other AO tables such as AO_777666_JIRA_INDEX, AO_D6A508_IMPORT_JOB and AO_92D5D5_REPO_NOTIFICATION will also present the same error without any action in the UI. Presumably background tasks.
The below exception is thrown in the atlassian-bamboo.log file:
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2018-05-08 05:47:40,348 ERROR [http-nio-8085-exec-23] [ThrowableExceptionMapper] Uncaught exception thrown by REST service: bundle [com.atlassian.troubleshooting.plugin-bamboo]
com.atlassian.activeobjects.internal.ActiveObjectsInitException: bundle [com.atlassian.troubleshooting.plugin-bamboo]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:95)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86)
at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:38)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Could not read fields for table AO_2F1435_HEALTH_CHECK_STATUS
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:139)
at net.java.ao.schema.ddl.SchemaReader.readFields(SchemaReader.java:126)
at net.java.ao.schema.ddl.SchemaReader.readTable(SchemaReader.java:110)
at net.java.ao.schema.ddl.SchemaReader.access$000(SchemaReader.java:62)
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:99)
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:97)
at com.google.common.collect.Iterators$8.transform(Iterators.java:799)
at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48)
at com.google.common.collect.Iterators.addAll(Iterators.java:362)
at com.google.common.collect.Lists.newArrayList(Lists.java:160)
at com.google.common.collect.Lists.newArrayList(Lists.java:144)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:97)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:88)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:81)
at net.java.ao.schema.SchemaGenerator.generateImpl(SchemaGenerator.java:107)
at net.java.ao.schema.SchemaGenerator.migrate(SchemaGenerator.java:84)
at net.java.ao.EntityManager.migrate(EntityManager.java:128)
at com.atlassian.activeobjects.internal.EntityManagedActiveObjects.migrate(EntityManagedActiveObjects.java:51)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:77)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:72)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:21)
at com.atlassian.sal.spring.component.SpringHostContextAccessor$1.doInTransaction(SpringHostContextAccessor.java:71)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140)
at com.atlassian.sal.spring.component.SpringHostContextAccessor.doInTransaction(SpringHostContextAccessor.java:68)
at sun.reflect.GeneratedMethodAccessor175.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
at com.sun.proxy.$Proxy372.doInTransaction(Unknown Source)
at sun.reflect.GeneratedMethodAccessor175.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy611.doInTransaction(Unknown Source)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate.execute(HostContextTransactionTemplate.java:18)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy700.execute(Unknown Source)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory.create(AbstractActiveObjectsFactory.java:72)
at com.atlassian.activeobjects.internal.DelegatingActiveObjectsFactory.create(DelegatingActiveObjectsFactory.java:32)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:91)
... 6 more
Caused by: java.sql.SQLSyntaxErrorException: Table 'bamboo1.AO_2F1435_HEALTH_CHECK_STATUS' doesn't exist
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247)
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3149)
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3137)
at com.mysql.cj.jdbc.IterateBlock.doForAll(IterateBlock.java:56)
at com.mysql.cj.jdbc.DatabaseMetaData.getPrimaryKeys(DatabaseMetaData.java:3190)
at com.mchange.v2.c3p0.impl.NewProxyDatabaseMetaData.getPrimaryKeys(NewProxyDatabaseMetaData.java:3222)
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:127)
... 79 more
Note, the schema bamboo1 is not the one defined in the JDBC connection string, it's another database:
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<property name="hibernate.connection.url">jdbc:mysql://localhost/bambooupgrade?autoReconnect=true&useLegacyDatetimeCode=false&serverTimezone=UTC</property>
If we then go and drop bamboo1 (empty db created for reproduction purposes), it starts looking in sys schemas such as information_schema instead:
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2018-05-08 05:52:46,894 ERROR [http-nio-8085-exec-18] [ThrowableExceptionMapper] Uncaught exception thrown by REST service: bundle [com.atlassian.troubleshooting.plugin-bamboo]
com.atlassian.activeobjects.internal.ActiveObjectsInitException: bundle [com.atlassian.troubleshooting.plugin-bamboo]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:95)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86)
at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:38)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Could not read fields for table AO_2F1435_HEALTH_CHECK_STATUS
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:139)
at net.java.ao.schema.ddl.SchemaReader.readFields(SchemaReader.java:126)
at net.java.ao.schema.ddl.SchemaReader.readTable(SchemaReader.java:110)
at net.java.ao.schema.ddl.SchemaReader.access$000(SchemaReader.java:62)
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:99)
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:97)
at com.google.common.collect.Iterators$8.transform(Iterators.java:799)
at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48)
at com.google.common.collect.Iterators.addAll(Iterators.java:362)
at com.google.common.collect.Lists.newArrayList(Lists.java:160)
at com.google.common.collect.Lists.newArrayList(Lists.java:144)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:97)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:88)
at net.java.ao.schema.ddl.SchemaReader.readSchema(SchemaReader.java:81)
at net.java.ao.schema.SchemaGenerator.generateImpl(SchemaGenerator.java:107)
at net.java.ao.schema.SchemaGenerator.migrate(SchemaGenerator.java:84)
at net.java.ao.EntityManager.migrate(EntityManager.java:128)
at com.atlassian.activeobjects.internal.EntityManagedActiveObjects.migrate(EntityManagedActiveObjects.java:51)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:77)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:72)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:21)
at com.atlassian.sal.spring.component.SpringHostContextAccessor$1.doInTransaction(SpringHostContextAccessor.java:71)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140)
at com.atlassian.sal.spring.component.SpringHostContextAccessor.doInTransaction(SpringHostContextAccessor.java:68)
at sun.reflect.GeneratedMethodAccessor171.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
at com.sun.proxy.$Proxy372.doInTransaction(Unknown Source)
at sun.reflect.GeneratedMethodAccessor171.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy611.doInTransaction(Unknown Source)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate.execute(HostContextTransactionTemplate.java:18)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy704.execute(Unknown Source)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory.create(AbstractActiveObjectsFactory.java:72)
at com.atlassian.activeobjects.internal.DelegatingActiveObjectsFactory.create(DelegatingActiveObjectsFactory.java:32)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:91)
... 6 more
Caused by: java.sql.SQLSyntaxErrorException: Unknown table 'AO_2F1435_HEALTH_CHECK_STATUS' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247)
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3149)
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3137)
at com.mysql.cj.jdbc.IterateBlock.doForAll(IterateBlock.java:56)
at com.mysql.cj.jdbc.DatabaseMetaData.getPrimaryKeys(DatabaseMetaData.java:3190)
at com.mchange.v2.c3p0.impl.NewProxyDatabaseMetaData.getPrimaryKeys(NewProxyDatabaseMetaData.java:3222)
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:127)
... 79 more
The below exception is thrown in the atlassian-fisheye.log file after clicking on the 'Smart Commits' menu:
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2018-05-09 09:43:12,295 WARN [qtp400103862-1073 ] org.eclipse.jetty.servlet.ServletHandler ServletHandler-doHandle - /plugins/servlet/smart-commits/config
com.atlassian.activeobjects.internal.ActiveObjectsInitException: bundle [com.atlassian.fecru.plugin.commithook.fecru-commithooks-plugin]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:95) [?:?]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86) [?:?]
at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:38) [?:?]
at java.util.concurrent.FutureTask.run(FutureTask.java:266) [?:1.8.0_162]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [?:1.8.0_162]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [?:1.8.0_162]
at java.lang.Thread.run(Thread.java:748) [?:1.8.0_162]
Caused by: java.lang.RuntimeException: Could not read fields for table AO_8219D4_COMMIT_HOOK_CONFIG
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:139) [?:?]
at net.java.ao.schema.ddl.SchemaReader.readFields(SchemaReader.java:126) [?:?]
at net.java.ao.schema.ddl.SchemaReader.readTable(SchemaReader.java:110) [?:?]
at net.java.ao.schema.ddl.SchemaReader.access$000(SchemaReader.java:62) [?:?]
...
Caused by: java.sql.SQLSyntaxErrorException: Unknown table 'AO_8219D4_COMMIT_HOOK_CONFIG' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3149) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3137) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.IterateBlock.doForAll(IterateBlock.java:56) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.DatabaseMetaData.getPrimaryKeys(DatabaseMetaData.java:3190) [mysql-connector-java-8.0.11.jar:8.0.11]
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:127) [?:?]
... 67 moreThe atlassian-fisheye.log also report problems with the AO_2913F5_COMMENT_ISSUE Active Objects table:
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2018-05-09 09:41:12,651 WARN [qtp400103862-1072 ] fisheye DefaultInjectableWebFragmentDataFactory-lambda$getWebPanels$2 - Error getting html for web panel: com.atlassian.plugin.web.descriptors.DefaultWebPanelModuleDescriptor$ContextAwareWebPanel@3aba7958 at location: system.crucible.review.comment
com.atlassian.activeobjects.internal.ActiveObjectsInitException: bundle [com.atlassian.crucible.plugins.jira-ril]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:95) [?:?]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86) [?:?]
at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:38) [?:?]
at java.util.concurrent.FutureTask.run(FutureTask.java:266) [?:1.8.0_162]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [?:1.8.0_162]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [?:1.8.0_162]
at java.lang.Thread.run(Thread.java:748) [?:1.8.0_162]
Caused by: java.lang.RuntimeException: Could not read fields for table AO_2913F5_COMMENT_ISSUE
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:139) [?:?]
at net.java.ao.schema.ddl.SchemaReader.readFields(SchemaReader.java:126) [?:?]
at net.java.ao.schema.ddl.SchemaReader.readTable(SchemaReader.java:110) [?:?]
at net.java.ao.schema.ddl.SchemaReader.access$000(SchemaReader.java:62) [?:?]
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:99) [?:?]
at net.java.ao.schema.ddl.SchemaReader$1.apply(SchemaReader.java:97) [?:?]
...
Caused by: java.sql.SQLSyntaxErrorException: Unknown table 'AO_2913F5_COMMENT_ISSUE' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3149) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.DatabaseMetaData$7.forEach(DatabaseMetaData.java:3137) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.IterateBlock.doForAll(IterateBlock.java:56) [mysql-connector-java-8.0.11.jar:8.0.11]
at com.mysql.cj.jdbc.DatabaseMetaData.getPrimaryKeys(DatabaseMetaData.java:3190) [mysql-connector-java-8.0.11.jar:8.0.11]
at net.java.ao.schema.helper.DatabaseMetaDataReaderImpl.getFields(DatabaseMetaDataReaderImpl.java:127) [?:?]
... 67 more
Workaround
Downgrade the JDBC connector to 5.1.46 and restart the application:
Environment
None
Testing Notes
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Status
Assignee
Unassigned
Reporter
Jeremy Owen
Labels
None
Add-on Type
None
Team
None
CC
None
Risk factor
None
QA Kickoff Status
None
QA Demo Status
None
Priority
Major